Bioinformatics tools developed at the department of Molecular Genetics, RUG, university of Groningen, the Netherlands. |
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FG-web platform
FG-web allows a bioinformatics researcher to generate with a minimum of time investment robust web-based software that is integrated with genomics and transcriptomics data. All below-mentioned software was developed using- and runs within FG-web. |
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Projector 2
Projector was designed for automatic positioning of contigs from an unfinished prokaryotic genome onto (parts of) a template genome of a closely related strain or species. |
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UniFrag
Selects the most unique regions from FASTA formatted DNA sequences in an iterative manner. |
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ORF
Detects Open Reading Frames in FASTA formatted DNA sequences. |
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PPP
Prokaryotic Promoter Prediction determines from input sequences the putative promoter sequences by using multiple HMM models. |
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NEW: BAGEL2
BActeriocin GEnome Location tool version 2 (2010).
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BAGEL
BActeriocin GEnome Location tool version 1 (2006). |
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SIMAGE
SImulation of DNA MicroArray Gene Expression Data. |
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CorrelGene
Restricted access. Under construction. |
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Motif
Motif searches for occurrences of DNA sequence motifs using HMMer. |
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Web tools