|
FIVA
Functional Information Viewer Analyzer detects affected biological processes in DNA microarray experiments. |
|
|
|
DISCLOSE
is an application for prokaryotes that benchmarks clustering methods using biological annotations and the SCOPE DNA binding site detection algorithm. This algorithm allows the prediction of cis-regulatory motifs of genes which are part of the same cluster. In addition, additional occurrences of identified motifs are determined. Moreover, putative motifs are compared with known DNA binding sites as well as a functional analysis of the genes bearing the motif in their upstream region. |
|
|
|
PROSECUTOR
enables microbiology researchers to rapidly infer gene function based on available gene expression data, genome structure and functional annotations. |
|
|
Genome2D
Genome2D is a toolbox for visualization and processing of prokaryotic genome and transcriptome information |
|
|
|
MicroPreP
The user-friendly MicroPreP framework was developed to provide a pipeline to transform raw intensity data from cDNA microarrays into high-quality data |
|
|
|
Projector
Projector was designed for automatic positioning of contigs from an unfinished prokaryotic genome on a template genome of a closely related strain or species |
|
|
|
GenomePrimer
High-throughput primer design software |
|
|
|
Blastextractor
BlastExtracter is a blast parser that converts Blast result files (NCBI BlastAll) into tab-delimited text files, which can be imported into MS Excel |
|
Web tools